Gudadantza: They are using the game files as they were and the music options are the same as in the past. The wavetable synth has to do with the windows driver of each user not with a GOG choosing about how the sound has to work.
For better sound the solution is the install of third party sound emulators, soundfont based emus like VirtualmidiSynt, Bassmidi or Fluidsynth or emulators like Munt.
mbuddha: Does this also affect the sound effects themselves? The sounds in my GOG U5 are not what I heard from the original game back in the day.
Emulators like Bassmidi or Munt have effect in the music. The U5 DOS version lacked music, but can be added general midi with a patch. In this case the midi sound played under the default windows synth can sound pretty bad, and that is the reason bassmidi or virtualmidisynth should be needed.
In any case any emu or patch is responsibility of each user, because every user has different preferences and different computer configurations