junker154: I seems like you have not yet noticed a vital part of the game. It is called Social Engineering. You can access that menu during the game by pressing "E".
This will show you a menu which represents your governement. There are 4 subcategories called Politics, Economics, Values and Future Society. Depending on your choice of faction you will have different policies, governement types and beliefs. Later on through research you can modify your governement to your liking by using various policitcal policies.
Thus enables you to give you certain boosts, like growth, research or income. But sometimes you will also suffer from downsides which can greatly cripple your factions dominance.
The faction bonuses will give you certain bonus/mali from start on which are faction related. The nifty thing about the Social Engineering tab is that you can clearly see the benefits and disavantages in the left bottom corner. You will get a precise explanation what is concerned and why.
For further information check the ingame index. You will get additional information about those certain bonuses.
Hope I could help.
You helped very much, thanks. Social Engineering gives me much better control over my faction, and I have a greater understanding of what the faction bonuses do.