While I'm waiting on my CE forums account to be activated (admins must be on vacation or something), it might be worth looking for help here.

I know enough about it to make use of the more basic functions. Searching for values, making a change to the value I want (in-game, like taking damage to see if the value I'm searching for changes), then freezing it and performing the same in-game change to see if it worked, all that stuff.

It's the more complex (to me, anyway) operations that confuse me, especially when the person giving instructions skips a few steps or speaks poor English (ex. Saying to 'Assign AutoAssemble Script to Cheat Table', when the whole procedure is 'Open Memory View, open Tools, and select Auto Assemble'. It's not helpful when you speak as if I should be intimately familiar with all aspects of everything. An algebra teacher can't tell you what you did wrong if all you right down is your answer, without showing all your work.)

Anyway, as shown in This Thread Here, the author says (after all the script), to "Assign AutoAssemble Script to Cheat Table. Enable cheat (freeze)." I pasted the script into the Auto Assembler, and clicked Execute, and it told me it was injected successfully. But what does 'Enable cheat (freeze)' mean? Am I supposed to tick the box next to "Auto Assembly Script" in the table? Is there a menu command I'm not seeing marked "Cheat (Freeze)"?

I haven't messed around that much with CE, but I'm pretty sure he's referring to the checkbox you're suggesting. If that entry is an address (or chain of addresses), checking it will freeze (default action) that value, hence the 'Enable cheat (freeze)' phrasing.

Edit:
As you probably already know, you can assign a hotkey to each entry, so that you can activate/deactivate it in-game (in most cases - some games hook the low-level keyboard event and just ignore any key not used in the game - YMMV)

I can assign the whole script to the Table, but rather than showing any one value, it shows as "Auto Assembly Script". Enabling it doesn't seem to work, so either the script is bad or the game keeps moving the value for 'Health' around to different addresses. Bionic Commando Rearmed apparently shifts memory around the same way that Ghost Recon Advanced Warfare does.

I got a general question about cheat engine, I have never used it before but downloaded it to make Kingdoms of alamur harder. I was wondering if there is any downside or trouble from using this program. I guess i got a little freaked out when the installer tried to force me to install a toolbar by not giving me a chose not to.