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I just fought the Flagship for the first time, to a mutual kill (which of course counts as a loss).

During the fight, when they went into cloak, my weapons stopped charging.
This looks like a glitch. Has anyone else experienced this or contacted Subset about it?

Glitch or designed, I feel robbed of a win... :/
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yup thats what cloaks do
they freeze your weapons ability to lock (hence charge) for the duration of the cloak
Post edited November 19, 2016 by Vyraexii
Enemy cloaking devices do stop your weapons charging - it works both ways as well, so if you get a cloaking device you stop enemies from charging weapons for a bit. You can't lock on to what you can't detect. :)

If it's any consolation, there's a bit more to the flagship than that. :)