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Duke Nukem 3D Atomic Edition crashes to the desktop, and a box comes up saying that the
DOSBox Dos Emulator has stopped working.

Please advice as to how to correct this error.
Figured out what the problem was. Just had to adjust the settings in the Graphics Setup to overlay, and now it works like a charm.
Something else that could help would be using the EDuke Source Port. It's got dynamic lighting and stuff, which makes it look shiny and nice.