The first part is self explanitory, I think. When Im in any menu (the start or if you hit esc, there is no curser at all, so Im blindly clicking for the save button)

However, when the cutscenes play, the subtitles stack on one another without going away for the duration of the conversation (this is also for any in-game conversation), but the display tries to switch between the cutscene and the Esc menu.

Anyone else having these problems?

This forum is for 3 different games. Which one are you having trouble with?
I'm guessing it's not the first one, since that one saves automatically.

Same for me - cursor is invisible in Atlantis 3. Compatibility settings do not help. I'm on Windows 8. It's really hard to play with this issue.

UPD: I managed to fix the issue. Cursor is invisible in 16bit color video mode, which is default one. So either switch to 32bit mode from the menu using invisible cursor, or add/edit this line at datas\atlantis3.cfg:
PixelFormat = 32bits
Don't forget to switch to 1024x768 resolution from the default 800x600 one :)

UPD2: Graphics settings are reset to defaults each time the game starts, so every time I restart it I need to change them back to 1024x768/32bit with this invisible cursor. Sometimes the game crashes during this change. That's another two issues.

UPD3: On widescreen monitors it tends to stretch to the whole screen, which gives incorrect proportions. For Nvidia owners the solution is to set scaling to 'aspect ratio', and to perform scaling on GPU instead of on monitor. The settings are on 'Adjust desktop size and position' tab in the Nvidia control panel.