Maerd: This is a plot hole
But plot holes can be filled with careful explanations in the next game, or even an expansion. I hope that he's one of the two that Letho lost track of, because then there's one unknown Witcher wandering around to be the antagonist in Witcher 3.
As a sidenote, I hope that if that happens, they name that Witcher Ted. It's such an inconspicuous name for a final boss character and I would literally laugh out loud
every time Geralt asked about him.
*No offense to any Teds around here. I'm sure you're all fearsome :)