groze: As of yet, it won't. Galaxy is still in beta stage and many features aren't implemented yet, so you'll have to do the transfer manually by copying the saves from their old location and placing it in the new Witcher save data folder.
noamlol2: damn...
is galaxy is still a beta should i buy the witcher 3 for steam or GOG?
Well... I'd recommend buying it on GOG, since the developers of the game, CD Projekt RED, are a sister company of GOG, and by supporting GOG you are also supporting CD Projekt RED. Also, GOG is a DRM-free store, if you want, you can play your games without using a client (Galaxy), just download them manually via your library, install them and play them.
For the record, The Witcher 3 is one of the few games that take full advantage of the Galaxy client, you can unlock achievements and track game play time just like you would on Steam. Witcher 3 plays great with Galaxy but it's completely optional, you don't have to have Galaxy installed to install or play any game you own on GOG, though it has certain advantages, such as an auto-update feature that already works quite well.