Is there anyone who has a fix for this? It's like the track is skipping or something.

Go into dosboxSQ6.conf (should be located in something like Program Files\GOG.com\SQ46\SQ6. Not sure of exact path cause I didn't buy them through GOG). Anyway, open the file with Notepad and look for a line that says output=. Change whatever it's set to, to ddraw. So that it reads output=ddraw.

If that doesn't work, also go to a line that says cycles=. Try setting it to MAX. Or you can try setting different values to make the game run slower or faster and see if one of those work better.

Thanks envisagedOne, that seemed to fix the stuttering a lot. There is still the occasional word droop here and there, but it is not often, and wont ruin the game experience. Also things seem to be running as normal now.