Well, it's not on PC, but if you can, try "Pokemon Snap" on the N64 :)
"Ecco the Dolphin" was a real pleasure for me to play when I was young (the first one). It's always nice to swim and discover the sea, even if there are enemies.
May be not an exploration game, but a very nice educational/adventure game : "Zoombinis" (PC 1996) (it begins with a very low level of difficulty, and rise each time you succeed, and become interesting even for a grown up).
"Spore" can be interesting, when you design your creature in 3D and discover the world.
"Shelter" can be nice too for the style and discovery.
"Octodad" isn't really exploration, but may be it can be interesting to take a look.
And "Stardew Valley" of course :)
And one that I only know through what I've read and saw : "The Witness". Exploration and logical puzzles.
Post edited January 22, 2017 by Splatsch